Genome assemblies metrics

Hover over icons to view corresponding captions  (  )

Species	Sex	Ploidy	Sequencing	Assembly size	Number of scaffolds	GC content	N content	N50	L50
Chondrus crispus Stackhouse  Sequencing: Sanger	Gametophyte (male)	Haploid	Sanger	104.98 Mbp	926	52.8%	8526%	242.69 Kbp	126
Delisea pulchra   Sequencing: PacBio Good quality assembly	Unknown	Unknown	PacBio	134.07 Mbp	217	52.1%	0%	1.47 Mbp	27
Gracilaria caudata M-176_S67  Sequencing: Illumina Draft genome	Male	Haploid	Illumina	31.75 Mbp	5535	49.9%	1282%	21.34 Kbp	396
Gracilaria chilensis NLEC103-M9  Sequencing: PacBio Near chromosome scale assembly	Male	Haploid	PacBio	79.77 Mbp	138	48.9%	0%	1.64 Mbp	18
Gracilaria gracilis GNS1m  Sequencing: PacBio Good quality assembly	Male	Haploid	PacBio	76.01 Mbp	279	49.6%	0%	576.49 Kbp	38
Gracilaria vermiculophylla HapMaleFtJ-2017  Sequencing: Illumina, HiC Near chromosome scale assembly	Male	Haploid	Illumina, HiC	47.14 Mbp	4240	49.4%	7385%	2.68 Mbp	6
Mazzaella laminarioides Center Female  Sequencing: PacBio, DNBseq Draft genome	Female	Haploid	PacBio, DNBseq	50.2 Mbp	782	50.2%	0%	143 Kbp	112
Mazzaella laminarioides Center Male  Sequencing: PacBio, DNBseq Draft genome	Male	Haploid	PacBio, DNBseq	53.3 Mbp	462	51.0%	0%	397 Kbp	42
Best genome assembly for the species Mazzaella laminarioides North Female  Sequencing: PacBio, DNBseq Good quality assembly	Female	Haploid	PacBio, DNBseq	42.8 Mbp	229	51.1%	0%	355 Kbp	42
Mazzaella laminarioides North Male  Sequencing: PacBio, DNBseq Good quality assembly	Male	Haploid	PacBio, DNBseq	45.9 Mbp	258	51.0%	0%	301 Kbp	45
Mazzaella laminarioides South Female  Sequencing: PacBio, DNBseq Good quality assembly	Female	Haploid	PacBio, DNBseq	49.34 Mbp	201	51.1%	0%	444 Kbp	35
Mazzaella laminarioides South Male  Sequencing: PacBio, DNBseq Good quality assembly	Male	Haploid	PacBio, DNBseq	49.89 Mbp	241	51.0%	0%	423 Kbp	40

Structural annotations metrics

Hover over icons to view corresponding captions  (  )

Species	Sex	Protein-coding genes	Exons per gene (mean | median)	CDS length (mean | median)	CDS percentage	Monoexonic genes	Contigs with at least one gene (percentage of genome | percentage of bases)	lncRNAs
Chondrus crispus Stackhouse  Sequencing:	Gametophyte (male)	9807	1.29 | 1.0	1051.1 | 774.0	9.81%	8336	70.95% | 95.74%	Undetermined
Delisea pulchra   Sequencing: PacBio   Good quality assembly	Unknown	13387	1.19 | 1.0	1433.71 | 1077.0	12.53%	10071	67.28% | 98.02%	Undetermined
Gracilaria caudata M-176_S67  Sequencing: Illumina   Draft genome	Male	8737	1.53 | 1.0	1273.29 | 1043.0	36.35%	6231	34.2% | 86.77%	Undetermined
Gracilaria chilensis NLEC103-M9  Sequencing: PacBio   Near chromosome scale assembly	Male	7943	1.37 | 1.0	1334.23 | 1082.0	13.45%	6079	53.62% | 95.51%	Undetermined
Gracilaria gracilis GNS1m  Sequencing: PacBio   Good quality assembly	Male	9460	1.55 | 1.0	1324.22 | 1043.0	16.85%	6680	77.41% | 96.7%	Undetermined
Gracilaria vermiculophylla HapMaleFtJ-2017  Sequencing: Illumina, HiC   Near chromosome scale assembly	Male	6807	1.4 | 1.0	1351.84 | 1085.0	20.21%	5169	6.58% | 96.21%	Undetermined
Mazzaella laminarioides Center Female  Sequencing: PacBio, DNBseq   Draft genome	Female	7152	Undetermined	1347.0 | 1089.0	19.86%	6026	Undetermined	Undetermined
Mazzaella laminarioides Center Male  Sequencing: PacBio, DNBseq   Draft genome	Male	8696	Undetermined	1318.0 | 1077.0	22.49%	7332	Undetermined	Undetermined
Best genome assembly for the species Mazzaella laminarioides North Female  Sequencing: PacBio, DNBseq   Good quality assembly	Female	7637	Undetermined	1334.0 | 1089.0	24.58%	6260	Undetermined	Undetermined
Mazzaella laminarioides North Male  Sequencing: PacBio, DNBseq   Good quality assembly	Male	8155	Undetermined	1341.0 | 1119.0	24.53%	6779	Undetermined	Undetermined
Mazzaella laminarioides South Female  Sequencing: PacBio, DNBseq   Good quality assembly	Female	8744	Undetermined	1314.0 | 1074.0	24.24%	7359	Undetermined	Undetermined
Mazzaella laminarioides South Male  Sequencing: PacBio, DNBseq   Good quality assembly	Male	8293	Undetermined	1350.0 | 1090.0	23.29%	6704	Undetermined	Undetermined

BUSCO metrics

Hover over icons to view corresponding captions  (  )

Species	Sex	BUSCO version	BUSCO lineage	Single copy genes (genome)	Duplicated genes (genome)	Fragmented genes (genome)	Missing genes (genomes)	Single copy genes (proteome)	Duplicated genes (proteome)	Fragmented genes (proteome)	Missing genes (proteome)
Chondrus crispus Stackhouse  Sequencing:	Gametophyte (male)	3	eukaryota_odb09	224	8	24	47	224	8	24	47
Delisea pulchra   Sequencing: PacBio   Good quality assembly	Unknown	5.5.0	eukaryota_odb10	73	1	9	15	188	4	24	39
Gracilaria caudata M-176_S67  Sequencing: Illumina   Draft genome	Male	5	eukaryota_odb10	189	7	22	37	182	4	22	47
Gracilaria chilensis NLEC103-M9  Sequencing: PacBio   Near chromosome scale assembly	Male	5	eukaryota_odb10	194	3	20	38	187	5	16	47
Gracilaria gracilis GNS1m  Sequencing: PacBio   Good quality assembly	Male	5	eukaryota_odb10	194	6	18	37	192	5	16	42
Gracilaria vermiculophylla HapMaleFtJ-2017  Sequencing: Illumina, HiC   Near chromosome scale assembly	Male	5	eukaryota_odb10	166	2	23	64	165	1	17	72
Mazzaella laminarioides Center Female  Sequencing: PacBio, DNBseq   Draft genome	Female	5.4.7	eukaryota_odb10	161	9	21	64	168	7	14	66
Mazzaella laminarioides Center Male  Sequencing: PacBio, DNBseq   Draft genome	Male	5.4.7	eukaryota_odb10	187	5	22	41	192	4	18	41
Best genome assembly for the species Mazzaella laminarioides North Female  Sequencing: PacBio, DNBseq   Good quality assembly	Female	5.4.7	eukaryota_odb10	159	7	19	70	168	5	12	70
Mazzaella laminarioides North Male  Sequencing: PacBio, DNBseq   Good quality assembly	Male	5.4.7	eukaryota_odb10	164	8	22	61	179	3	13	60
Mazzaella laminarioides South Female  Sequencing: PacBio, DNBseq   Good quality assembly	Female	5.4.7	eukaryota_odb10	185	7	20	43	197	2	14	42
Mazzaella laminarioides South Male  Sequencing: PacBio, DNBseq   Good quality assembly	Male	5.4.7	eukaryota_odb10	172	7	21	55	178	8	14	55